Package: scRNAstat
Type: Package
Title: A Pipeline to Process Single Cell RNAseq Data
Version: 0.1.1.2
Authors@R: c(
        person("Jianming","Zeng",
            email = "jmzeng1314@163.com",
            role = "aut"),
        person(given = "Yonghe",
           family = "Xia",
           role = c("ctb", "cre"),
           email = "xiayh17@gmail.com"),
        person("Biotrainee group",role = c("cph","fnd"))
    )
Maintainer: Yonghe Xia <xiayh17@gmail.com>
Description: A pipeline that can process single or multiple Single Cell
        RNAseq samples primarily specializes in Clustering and
        Dimensionality Reduction. Meanwhile we use common cell type
        marker genes for T cells, B cells, Myeloid cells, Epithelial
        cells, and stromal cells (Fiboblast, Endothelial cells,
        Pericyte, Smooth muscle cells) to visualize the Seurat
        clusters, to facilitate labeling them by biological names. Once
        users named each cluster, they can evaluate the quality of them
        again and find the de novo marker genes also.
License: AGPL (>= 3)
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.2
Depends: R (>= 2.10)
Imports: Seurat, ggplot2, stringr, clustree, magrittr, Matrix, dplyr,
        patchwork, colorspace, DBI
NeedsCompilation: no
Packaged: 2026-07-14 05:55:27 UTC; root
Author: Jianming Zeng [aut], Yonghe Xia [ctb, cre], Biotrainee group
        [cph, fnd]
Config/pak/sysreqs: cmake libfontconfig1-dev libfreetype6-dev
        libglpk-dev make libicu-dev libpng-dev libuv1-dev libxml2-dev
        libssl-dev python3 zlib1g-dev
Repository: https://xiayh17.r-universe.dev
Date/Publication: 2026-05-15 08:19:39 UTC
RemoteUrl: https://github.com/cran/scRNAstat
RemoteRef: HEAD
RemoteSha: f09288c2cf0bcf5d618f49da1018561a0aa5ccac