{
  "_id": "6acde91ba14063b82c3ace6e",
  "Package": "scRNAstat",
  "Type": "Package",
  "Title": "A Pipeline to Process Single Cell RNAseq Data",
  "Version": "0.1.1.2",
  "Authors@R": "c(\nperson(\"Jianming\",\"Zeng\",\nemail = \"jmzeng1314@163.com\",\nrole = \"aut\"),\nperson(given = \"Yonghe\",\nfamily = \"Xia\",\nrole = c(\"ctb\", \"cre\"),\nemail = \"xiayh17@gmail.com\"),\nperson(\"Biotrainee group\",role = c(\"cph\",\"fnd\"))\n)",
  "Maintainer": "Yonghe Xia <xiayh17@gmail.com>",
  "Description": "A pipeline that can process single or multiple Single Cell\nRNAseq samples primarily specializes in Clustering and\nDimensionality Reduction. Meanwhile we use common cell type\nmarker genes for T cells, B cells, Myeloid cells, Epithelial\ncells, and stromal cells (Fiboblast, Endothelial cells,\nPericyte, Smooth muscle cells) to visualize the Seurat\nclusters, to facilitate labeling them by biological names. Once\nusers named each cluster, they can evaluate the quality of them\nagain and find the de novo marker genes also.",
  "License": "AGPL (>= 3)",
  "Encoding": "UTF-8",
  "LazyData": "true",
  "RoxygenNote": "7.1.2",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-10-12 08:57:21 UTC",
    "User": "root"
  },
  "Author": "Jianming Zeng [aut], Yonghe Xia [ctb, cre], Biotrainee group\n[cph, fnd]",
  "Config/pak/sysreqs": "cmake libfontconfig1-dev libfreetype6-dev\nlibglpk-dev make libicu-dev libpng-dev libuv1-dev libxml2-dev\nlibssl-dev python3 zlib1g-dev",
  "Repository": "https://xiayh17.r-universe.dev",
  "Date/Publication": "2026-05-15 08:19:39 UTC",
  "RemoteUrl": "https://github.com/cran/scRNAstat",
  "RemoteRef": "HEAD",
  "RemoteSha": "f09288c2cf0bcf5d618f49da1018561a0aa5ccac",
  "_user": "xiayh17",
  "_type": "src",
  "_file": "scRNAstat_0.1.1.2.tar.gz",
  "_fileid": "https://r2.ropensci.org/8d8de9016e1440d4911d366b40ee3ae5431829e2bcc48d22821fd44ddf32ffc2",
  "_filesize": 2510824,
  "_sha256": "8d8de9016e1440d4911d366b40ee3ae5431829e2bcc48d22821fd44ddf32ffc2",
  "_expires": "2027-01-20T09:02:31.000Z",
  "_created": "2026-10-12T08:57:21.000Z",
  "_published": "2026-10-13T08:17:31.484Z",
  "_buildurl": "https://github.com/r-universe/xiayh17/actions/runs/38226347182",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_jobs": [
    {
      "job": 115194850532,
      "time": 195,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "11737003709"
    },
    {
      "job": 115194851892,
      "time": 243,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "11737665102"
    },
    {
      "job": 115194851030,
      "time": 183,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "11736504592"
    },
    {
      "job": 115194849223,
      "time": 141,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "11796944592"
    },
    {
      "job": 115194849525,
      "time": 255,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11736723637"
    },
    {
      "job": 115194850875,
      "time": 169,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "11736013568"
    },
    {
      "job": 115194851055,
      "time": 192,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "11736474398"
    },
    {
      "job": 115194851025,
      "time": 188,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "11736419326"
    },
    {
      "job": 115194851269,
      "time": 189,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "11736643789"
    }
  ],
  "_upstream": "https://github.com/cran/scRNAstat",
  "_commit": {
    "id": "f09288c2cf0bcf5d618f49da1018561a0aa5ccac",
    "author": "Yonghe Xia <xiayh17@gmail.com>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 0.1.1.2\n",
    "time": 1778833179
  },
  "_maintainer": {
    "name": "Yonghe Xia",
    "email": "xiayh17@gmail.com",
    "login": "xiayh17",
    "description": "",
    "uuid": 17431830
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 2.10",
      "role": "Depends"
    },
    {
      "package": "Seurat",
      "role": "Imports"
    },
    {
      "package": "ggplot2",
      "role": "Imports"
    },
    {
      "package": "stringr",
      "role": "Imports"
    },
    {
      "package": "clustree",
      "role": "Imports"
    },
    {
      "package": "magrittr",
      "role": "Imports"
    },
    {
      "package": "Matrix",
      "role": "Imports"
    },
    {
      "package": "dplyr",
      "role": "Imports"
    },
    {
      "package": "patchwork",
      "role": "Imports"
    },
    {
      "package": "colorspace",
      "role": "Imports"
    },
    {
      "package": "DBI",
      "role": "Imports"
    }
  ],
  "_owner": "cran",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2026-20",
      "n": 1
    }
  ],
  "_tags": [
    {
      "name": "0.1.1.2",
      "date": "2026-05-15"
    }
  ],
  "_stars": 0,
  "_contributors": [
    {
      "user": "xiayh17",
      "count": 3,
      "uuid": 17431830
    }
  ],
  "_userbio": {
    "uuid": 17431830,
    "type": "user",
    "name": "Young Sherlock",
    "followers": 48
  },
  "_downloads": {
    "count": 534,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/scRNAstat"
  },
  "_searchresults": 2,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/manual.pdf",
    "extra/scRNAstat.html"
  ],
  "_realowner": "xiayh17",
  "_cranurl": false,
  "_releases": [
    {
      "version": "0.1.1",
      "date": "2021-09-22"
    },
    {
      "version": "0.1.1.1",
      "date": "2025-03-08"
    },
    {
      "version": "0.1.1.2",
      "date": "2026-05-15"
    }
  ],
  "_exports": [
    "%>%",
    "basic_filter",
    "basic_find_markers",
    "basic_markers",
    "basic_qc",
    "basic_workflow"
  ],
  "_datasets": [
    {
      "name": "AJ064_small_last_sce",
      "title": "Small 'AJ064' Seurat Data After Processed",
      "object": "AJ064_small_last_sce",
      "class": [
        "Seurat"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "AJ064_small_sce",
      "title": "Small 'AJ064' Seurat Data Set",
      "object": "AJ064_small_sce",
      "class": [
        "Seurat"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    }
  ],
  "_help": [
    {
      "page": "AJ064_small_last_sce",
      "title": "Small `AJ064` Seurat Data After Processed",
      "topics": [
        "AJ064_small_last_sce"
      ]
    },
    {
      "page": "AJ064_small_sce",
      "title": "Small `AJ064` Seurat Data Set",
      "topics": [
        "AJ064_small_sce"
      ]
    },
    {
      "page": "basic_filter",
      "title": "basic_filter",
      "topics": [
        "basic_filter"
      ]
    },
    {
      "page": "basic_find_markers",
      "title": "Basic Find Markers",
      "topics": [
        "basic_find_markers"
      ]
    },
    {
      "page": "basic_markers",
      "title": "Basic Markers",
      "topics": [
        "basic_markers"
      ]
    },
    {
      "page": "basic_qc",
      "title": "Basic Quality Control",
      "topics": [
        "basic_qc"
      ]
    },
    {
      "page": "basic_workflow",
      "title": "Basic Workflow",
      "topics": [
        "basic_workflow"
      ]
    }
  ],
  "_rundeps": [
    "abind",
    "askpass",
    "backports",
    "base64enc",
    "BH",
    "bitops",
    "bslib",
    "cachem",
    "caTools",
    "checkmate",
    "cli",
    "cluster",
    "clustree",
    "codetools",
    "colorspace",
    "commonmark",
    "cowplot",
    "cpp11",
    "crosstalk",
    "curl",
    "data.table",
    "DBI",
    "deldir",
    "digest",
    "dotCall64",
    "dplyr",
    "dqrng",
    "evaluate",
    "farver",
    "fastDummies",
    "fastmap",
    "fitdistrplus",
    "FNN",
    "fontawesome",
    "fs",
    "future",
    "future.apply",
    "generics",
    "ggforce",
    "ggplot2",
    "ggraph",
    "ggrepel",
    "ggridges",
    "globals",
    "glue",
    "goftest",
    "gplots",
    "graphlayouts",
    "gridExtra",
    "gtable",
    "gtools",
    "here",
    "highr",
    "htmltools",
    "htmlwidgets",
    "httpuv",
    "httr",
    "ica",
    "igraph",
    "irlba",
    "isoband",
    "jquerylib",
    "jsonlite",
    "KernSmooth",
    "knitr",
    "labeling",
    "later",
    "lattice",
    "lazyeval",
    "lifecycle",
    "listenv",
    "lmtest",
    "magrittr",
    "MASS",
    "Matrix",
    "matrixStats",
    "memoise",
    "mime",
    "miniUI",
    "nlme",
    "openssl",
    "otel",
    "parallelly",
    "patchwork",
    "pbapply",
    "pillar",
    "pkgconfig",
    "plotly",
    "plyr",
    "png",
    "polyclip",
    "progressr",
    "promises",
    "purrr",
    "R6",
    "RANN",
    "rappdirs",
    "RColorBrewer",
    "Rcpp",
    "RcppAnnoy",
    "RcppArmadillo",
    "RcppEigen",
    "RcppHNSW",
    "RcppProgress",
    "RcppThread",
    "RcppTOML",
    "reshape2",
    "reticulate",
    "rlang",
    "rmarkdown",
    "ROCR",
    "rprojroot",
    "RSpectra",
    "Rtsne",
    "S7",
    "sass",
    "scales",
    "scattermore",
    "sctransform",
    "Seurat",
    "SeuratObject",
    "shiny",
    "sitmo",
    "sourcetools",
    "sp",
    "spam",
    "spatstat.data",
    "spatstat.explore",
    "spatstat.geom",
    "spatstat.random",
    "spatstat.sparse",
    "spatstat.univar",
    "spatstat.utils",
    "stringi",
    "stringr",
    "survival",
    "sys",
    "systemfonts",
    "tensor",
    "tibble",
    "tidygraph",
    "tidyr",
    "tidyselect",
    "tinytex",
    "tweenr",
    "utf8",
    "uwot",
    "vctrs",
    "viridis",
    "viridisLite",
    "withr",
    "xfun",
    "xtable",
    "yaml",
    "zoo"
  ],
  "_score": 1,
  "_indexed": true,
  "_nocasepkg": "scrnastat",
  "_universes": [
    "xiayh17"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.1.1.2",
      "date": "2026-10-12T09:00:06.000Z",
      "distro": "resolute",
      "commit": "f09288c2cf0bcf5d618f49da1018561a0aa5ccac",
      "fileid": "https://r2.ropensci.org/936cf3758908e0f61fa0aa162f7ce0d5de46f55535ea02ea830c6b83d1f19989",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/xiayh17/actions/runs/38226347182"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "0.1.1.2",
      "date": "2026-10-12T09:00:17.000Z",
      "distro": "resolute",
      "commit": "f09288c2cf0bcf5d618f49da1018561a0aa5ccac",
      "fileid": "https://r2.ropensci.org/59109c91fa29e8fc22b4681d1f32e6d106208b8f3182a9c91a5a197eed3b8739",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/xiayh17/actions/runs/38226347182"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.1.1.2",
      "date": "2026-10-12T08:59:37.000Z",
      "commit": "f09288c2cf0bcf5d618f49da1018561a0aa5ccac",
      "fileid": "https://r2.ropensci.org/9bce4e5980d03ddedebf6049f8e660e28d4fa5d65bf6e077468722405b9268b3",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/xiayh17/actions/runs/38226347182"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "0.1.1.2",
      "date": "2026-10-13T08:16:04.000Z",
      "commit": "f09288c2cf0bcf5d618f49da1018561a0aa5ccac",
      "fileid": "https://r2.ropensci.org/f2c844362240c35d0db9c2fcd300a8f918dc9953b1e662e8f2345c02bd2fdc92",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/xiayh17/actions/runs/38226347182"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.1.1.2",
      "date": "2026-10-12T09:00:33.000Z",
      "commit": "f09288c2cf0bcf5d618f49da1018561a0aa5ccac",
      "fileid": "https://r2.ropensci.org/a68a51a8a67d8552cee3c26ea2077b4d12a2194c3fc18f81db7e809511a7ed63",
      "status": "success",
      "buildurl": "https://github.com/r-universe/xiayh17/actions/runs/38226347182"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.1.1.2",
      "date": "2026-10-12T08:59:18.000Z",
      "commit": "f09288c2cf0bcf5d618f49da1018561a0aa5ccac",
      "fileid": "https://r2.ropensci.org/4dc007602317151f00d65dc2b280337c96d17fee68b8d4979b7a29a27f95ef25",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/xiayh17/actions/runs/38226347182"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.1.1.2",
      "date": "2026-10-12T08:59:12.000Z",
      "commit": "f09288c2cf0bcf5d618f49da1018561a0aa5ccac",
      "fileid": "https://r2.ropensci.org/c04741f39d9e75e65887793acd3d1b2f36b1c490ea652c069d87aeacb0402e9a",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/xiayh17/actions/runs/38226347182"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "0.1.1.2",
      "date": "2026-10-12T08:59:11.000Z",
      "commit": "f09288c2cf0bcf5d618f49da1018561a0aa5ccac",
      "fileid": "https://r2.ropensci.org/6af3ad16879b295df62c6a83be62e0902a3e75a82615276d628b51158e04b922",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/xiayh17/actions/runs/38226347182"
    }
  ]
}